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Tiago Peixoto
graph-tool
Commits
cea90112
Commit
cea90112
authored
Feb 26, 2010
by
Tiago Peixoto
Browse files
Small docstring fix
parent
b9bbc350
Changes
3
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src/graph_tool/clustering/__init__.py
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cea90112
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@@ -486,7 +486,7 @@ def motif_significance(g, k, n_shuffles=100, p=1.0, motif_list=None,
where :math:`N_i` is the number of times motif i found, and :math:`N^s_i`
is the count of the same motif but on a shuffled network. It measures how
many standard deviations is each motif count, in respect to a ensemble of
many standard deviations is each motif count, in respect to a
n
ensemble of
randomly shuffled graphs with the same degree sequence.
The z-scores values are not normalized.
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src/graph_tool/generation/__init__.py
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cea90112
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@@ -100,9 +100,8 @@ def random_graph(N, deg_sampler, deg_corr=None, directed=True,
the :func:`~graph_tool.generation.random_rewire` function.
The complexity is :math:`O(V+E)` if parallel edges are allowed, and
:math:`O(V+E \times \log N_k)` if parallel edges are not allowed, where
:math:`N_k < V` is the number of different degrees sampled (or in,out-degree
pairs).
:math:`O(V+E\log N_k)` if parallel edges are not allowed, where :math:`N_k <
V` is the number of different degrees sampled (or in,out-degree pairs).
References
----------
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@@ -264,11 +263,11 @@ def random_rewire(g, strat= "uncorrelated", parallel_edges = False,
g : :class:`~graph_tool.Graph`
Graph to be shuffled. The graph will be modified.
strat : string (optional, default: "uncorrelated")
If `strat` =
=
"erdos", the resulting graph will be entirely random. If
`strat` =
=
"uncorrelated" only the degrees of the vertices will be
maintained, nothing else. If `strat` =
=
"correlated", additionally the
If `strat` = "erdos", the resulting graph will be entirely random. If
`strat` = "uncorrelated" only the degrees of the vertices will be
maintained, nothing else. If `strat` = "correlated", additionally the
new source and target of each edge both have the same in and out-degree.
If `strat` =
=
"probabilistic", than edges are rewired according to the
If `strat` = "probabilistic", than edges are rewired according to the
degree correlation given by the parameter `deg_corr`.
parallel : bool (optional, default: False)
If True, parallel edges are allowed.
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src/graph_tool/topology/__init__.py
View file @
cea90112
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@@ -704,7 +704,7 @@ def shortest_path(g, source, target, weights=None, pred_map=None):
Graph to be used.
source : :class:`~graph_tool.Vertex`
Source vertex of the search.
source
: :class:`~graph_tool.Vertex`
target
: :class:`~graph_tool.Vertex`
Target vertex of the search.
weights : :class:`~graph_tool.PropertyMap` (optional, default: None)
The edge weights. If provided, the minimum spanning tree will minimize
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